Posts tagged Valeria Ramírez-Castañeda
Tarvin Lab 2023 publication round-up
Tarvin Lab 2023 publication round-up

Quickly wanted to highlight some of our lab’s publications this year:

  1. Out in March, from a side project during my PhD and a collaboration with friend Anne Chambers: Chambers^, EA, RD Tarvin^, JC Santos, SR Ron, M Betancourth-Cundar, DM Hillis, MV Matz, and DC Cannatella. 2023. 2b or not 2b? 2bRAD is an effective alternative to ddRAD for phylogenomics. Ecology and Evolution 13: e9842. PDF • https://doi.org/10.1002/ece3.9842 • Twitter Thread (3/10/23)

  2. Out in June, Kate Montana’s undergraduate thesis: Montana, KO, V Ramírez-Castañeda† and RD Tarvin. 2023. Are Pacific Chorus Frogs (Pseudacris regilla) resistant to tetrodotoxin (TTX)? Characterizing potential TTX exposure and resistance in an ecological associate of Pacific Newts (Taricha). Journal of Herpetology 57: 220—228. (Open Access) https://doi.org/10.1670/22-002 • PDF

  3. Out in October, Yin Chen Wan’s undergraduate thesis: Wan^, YC, MJ Navarrete^†, LA O’Connell, LH Uricchio, A Roland, ME Maan, SR Ron, M Betancourth-Cundar, MR Pie, K Howell, CL Richards-Zawacki, ME Cummings, DC Cannatella, JC Santos*, and RD Tarvin*. 2023. Selection on visual opsin genes in diurnal Neotropical frogs and loss of the SWS2 opsin in poison frogs. Molecular Biology and Evolution 40: msad206. (Open Access) https://doi.org/10.1093/molbev/msad206 • PDF • Twitter Thread (10/21/22)

  4. Out in November, a Tarvin lab collaborative review paper: Tarvin*, RD, KC Pearson*, TE Douglas, V Ramírez-Castañeda, María José Navarrete. 2023. The diverse mechanisms animals use to resist toxins. Annual Review of Ecology, Evolution, and Systematics. https://doi.org/10.1146/annurev-ecolsys-102320-102117 • PDF

  5. Also out in November, a response to a commentary about specimen collection: Nachman, MW, … RD Tarvin, et al. 2023. Specimen collection is essential for modern science. PLoS Biology 21:e3002318. https://doi.org/10.1371/journal.pbio.3002318 • PDF

new publication, lab activitiesRebecca Tarvinundergraduate research, graduate research, Kate Montana, Kannon Pearson, Valeria Ramírez-Castañeda, Maria Jose Navarrete-Mendez, Yin Chen Wan, Lawrence Uricchio, Tyler Douglas, Santiago Ron, Mileidy Betancourth-Cundar
Becca & Valeria visit University of Florida

Valeria and I were recently invited to give a talk for the Helicopter Science series at the University of Florida. We presented our fieldwork equity paper and had a lively discussion with students and faculty across departments about how to rethink our approaches in field-based research.

Here are some of their thoughts:

Valeria and I enjoyed the subtropical climate very much.

dei, fieldworkRebecca TarvinBecca Tarvin, Valeria Ramírez-Castañeda
Valeria is a 2022 World Wildlife Fund Russell E. Train Fellow

Congratulations to Valeria! The WWF EFN program will support her during her final years of the doctorate program at UC Berkeley.

Valeria Ramírez Castañeda in Leticia, Amazonas, Colombia. Photo by Darío Alarcón

An excerpt from Valeria’s application:

Research and conservation of neotropical snakes is not only relevant but also urgent and timely in the face of the rapid deforestation rate of the Amazon rainforest in the last decade. The city of Leticia, located in the center of the Amazon rainforest, has 50,000 inhabitants of diverse origins who interact in different ways with nature, yet all of them encounter snakes in their daily lives. More than 30 species of snakes are commonly found in this city but at least a hundred live in the Central Amazon basin region, including at least three endemic species. However, it is estimated that millions of snakes are killed daily in Colombia, the main reasons being deforestation and intentional mortality by humans. Therefore, the urbanization processes in the Amazon and the city’s inhabitants are key players in the future of the rainforest. 

Snakes are secondary predators and accomplish a key role in the ecosystem as frog, lizard, and small mammal consumers. Thus, studying snake interactions is fundamental to determining trophic networks in the rainforest. My main interest is to understand how reciprocal interaction between species can maintain and produce biodiversity in the tropics. Coevolution has traditionally been based on non-tropical models. For example, in my research topic, one of the best-known predator-prey models is the interaction between Californian garter snakes and their toxic newt prey. Although this model has revealed how resistance against a single toxin in a one-to-one species interaction arises, diversity in the tropics imposes new challenges. In the Colombian Amazon, more than 50 species of snakes species are feeding on frogs that secrete toxin cocktails. Thus, it is necessary to investigate tropical systems to understand coevolution in complex scenarios.

awardsRebecca TarvinValeria Ramírez-Castañeda
Moving towards #MultilingualScience
 
 

We posted our first two sets of translations from my Breaking Language Barriers Seminar. Check them out here.

  • Diaz et al 2006, Biodiversity loss threatens human well-being -- now available in Spanish and Chinese!

  • Arguello et al 2019, From genetics to biology: advancing mental health research in the Genomics ERA — abstract now available in Chinese, Spanish, Tamil, and plain language

  • Egido et al 2022, Mechanisms and clinical importance of bacteriophage resistance. now available: visual art summarizing concepts in the paper

  • Ehrenberg et al. 2021, Launching a saliva-based SARS-CoV-2 surveillance testing program on a university campus. Full article now available in Chinese. Abstracts now available in Chinese, Spanish, Tamil, and plain language.

  • Rabe et al. 2020, Post-hurricane shifts in the morphology of island lizards. Abstracts now available in Chinese, Spanish, Tamil, and plain language. Full article available in Spanish (email Becca for access)

  • Sidlauskas et al. 2021, Teaching ichthyology online with a virtual specimen collection. Full article now available in Chinese

  • Vernier et al. 2020, The gut microbiome defines social group membership in honey bee colonies. Abstracts now available in Chinese, Spanish, Tamil, and plain language.

  • Woodmansee et al. 2021, On-ranch adaptation to California’s historic 2012-2016 drought. Abstracts now available in Chinese, Spanish, Tamil, and plain language.

A blog co-authored by Rebecca and several colleagues about language barriers in science has been posted on the multilingual website Global Development Network. It is available in English, French, and Spanish.

And our new perspective piece is out now in BioScience: “Overcoming Language Barriers in Academia: Machine Translation Tools and a Vision for a Multilingual Future”. See the Press Release (English, Español)

See twitter threads in Spanish, Portuguese, and English

teaching, dei, new publicationRebecca Tarvinmultilingual science, Valeria Ramírez-Castañeda
New awards and 3 new lab members

It’s grant season…

  • Valeria was awarded a Tinker Field Research Grant from the Center for Latin America Studies at UC Berkeley

  • Valeria, Majo, and Tyler each received funding from the MVZ for summer research

  • Kannon Pearson was recognized by the Rausser College Dean’s Office of Instruction and Student Affairs Award Committee with the Kenneth L. Babcock Prize in Environmental Science for his outstanding research and outreach efforts. Kannon will be joining us as a new graduate student in the fall.

  • TBD was awarded an NSF PRFB and will be joining the lab in the fall. More information soon!

  • Sofia Beskind, currently an undergraduate researcher in the Matz Lab at UT Austin, will be joining us this summer to do research on Epipedobates, funded by an NSF REU grant that she received. Congrats Sofia!

awards, grants, new team memberRebecca TarvinValeria Ramírez-Castañeda, Tyler Douglas, Maria Jose Navarrete-Mendez, Kannon Pearson, Inga Conti-Jerpe, Sofia Beskind
Snakes on three planes

Valeria successfully brought two snakes (on a plane) from the Amazon to Bogotá, Colombia, where she was able to obtain flash frozen tissues. Then she laboriously organized the export of the tissues to the USA (plane #2) while ensuring that they remain frozen, up until they arrived to the Vertebrate Genome Project lab this week (plane #3). We are so excited to process our first snake genome!

Meet Sandrita, the first of her species (Erythrolamprus reginae) to have her genome sequenced.

Meet Sandrita, the first of her species (Erythrolamprus reginae) to have her genome sequenced.

fieldwork, sequencingRebecca Tarvinsnakes, Amazon, Valeria Ramírez-Castañeda, genome, sequencing, fieldwork